Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01678.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 739

Length: 1232
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32


Found at i:162 original size:23 final size:23

Alignment explanation


    Indices: 132--181  Score: 100
    Period size: 23  Copynumber: 2.2  Consensus size: 23

        122 CGGCGAAAAA

                                   
        132 AGAAAAAACATTAAAAGCTCTTT
          1 AGAAAAAACATTAAAAGCTCTTT

                                   
        155 AGAAAAAACATTAAAAGCTCTTT
          1 AGAAAAAACATTAAAAGCTCTTT

                
        178 AGAA
          1 AGAA

        182 GCCTTCTGTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   27  1.00

ACGTcount: A:0.54, C:0.12, G:0.10, T:0.24


Consensus pattern (23 bp):   
AGAAAAAACATTAAAAGCTCTTT
Done.