Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01685.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2461
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33


Found at i:354 original size:15 final size:15

Alignment explanation


    Indices: 330--366  Score: 56
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        320 AATGGCAGGA

                 *        *
        330 GGAGGGGGTGGTGGT
          1 GGAGGAGGTGGTGGC

                           
        345 GGAGGAGGTGGTGGC
          1 GGAGGAGGTGGTGGC

                   
        360 GGAGGAG
          1 GGAGGAG

        367 CTGCACCACC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  15   20  1.00

ACGTcount: A:0.14, C:0.03, G:0.70, T:0.14


Consensus pattern (15 bp):   
GGAGGAGGTGGTGGC

Found at i:366 original size:18 final size:18

Alignment explanation


    Indices: 326--366  Score: 55
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        316 AAAAAATGGC

                           *  
        326 AGGAGGAGGGGGTGGTGG
          1 AGGAGGAGGGGGTGGCGG

            *        *        
        344 TGGAGGAGGTGGTGGCGG
          1 AGGAGGAGGGGGTGGCGG

                 
        362 AGGAG
          1 AGGAG

        367 CTGCACCACC


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.17, C:0.02, G:0.68, T:0.12


Consensus pattern (18 bp):   
AGGAGGAGGGGGTGGCGG
Done.