Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01686.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 561

Length: 936
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35


Found at i:213 original size:21 final size:20

Alignment explanation


    Indices: 175--213  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 20

        165 AATACAATAT

                     *          
        175 TGAAAGATTGAATAGGAAAA
          1 TGAAAGATTCAATAGGAAAA

                          *    
        195 TGAAACGATTCAATCGGAA
          1 TGAAA-GATTCAATAGGAA

        214 GAAAAAAAAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    5  0.31
  21   11  0.69

ACGTcount: A:0.49, C:0.08, G:0.23, T:0.21


Consensus pattern (20 bp):   
TGAAAGATTCAATAGGAAAA
Done.