Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01694.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1768
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29


Found at i:1639 original size:39 final size:36

Alignment explanation


    Indices: 1579--1651  Score: 146
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       1569 TGAAGAATGT

                                                
       1579 TGTTGTGGCATAGTATGAGAAGAAGCCAACTAAGGC
          1 TGTTGTGGCATAGTATGAGAAGAAGCCAACTAAGGC

                                                
       1615 TGTTGTGGCATAGTATGAGAAGAAGCCAACTAAGGC
          1 TGTTGTGGCATAGTATGAGAAGAAGCCAACTAAGGC

             
       1651 T
          1 T

       1652 AGATGAAATA


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   37  1.00

ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23


Consensus pattern (36 bp):   
TGTTGTGGCATAGTATGAGAAGAAGCCAACTAAGGC
Done.