Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00059.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:1363 original size:23 final size:23

Alignment explanation


    Indices: 1337--1384  Score: 87
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       1327 ACATAGTTTG

                                   
       1337 TATCATATAGAAAAATATGCTTT
          1 TATCATATAGAAAAATATGCTTT

                    *              
       1360 TATCATATGGAAAAATATGCTTT
          1 TATCATATAGAAAAATATGCTTT

              
       1383 TA
          1 TA

       1385 GTATTTCTCG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40


Consensus pattern (23 bp):   
TATCATATAGAAAAATATGCTTT
Done.