Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01699.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 975

Length: 1625
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:1380 original size:3 final size:3

Alignment explanation


    Indices: 1372--1396  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1362 TACAAATACT

                                             
       1372 GAA GAA GAA GAA GAA GAA GAA GAA G
          1 GAA GAA GAA GAA GAA GAA GAA GAA G

       1397 GTGCTTCTGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (3 bp):   
GAA

Done.