Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01724.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3180
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33


Found at i:2396 original size:13 final size:14

Alignment explanation


    Indices: 2374--2406  Score: 50
    Period size: 13  Copynumber: 2.4  Consensus size: 14

       2364 ATGTTTATAT

                         *
       2374 ATTTTATTTATTTG
          1 ATTTTATTTATTTA

                          
       2388 ATTTT-TTTATTTA
          1 ATTTTATTTATTTA

                  
       2401 ATTTTA
          1 ATTTTA

       2407 ATAAAATAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  13   12  0.71
  14    5  0.29

ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73


Consensus pattern (14 bp):   
ATTTTATTTATTTA
Done.