Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00660.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2772
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:455 original size:26 final size:25

Alignment explanation


    Indices: 415--470  Score: 67
    Period size: 26  Copynumber: 2.2  Consensus size: 25

        405 TATGTATTTA

                     **               
        415 AAATTACTGTTATACCCCTAGGAGAT
          1 AAATTACTGAAATACCCCTAGG-GAT

                            *      * 
        441 AAATTACTGAAATACCTCTAGGGTT
          1 AAATTACTGAAATACCCCTAGGGAT

                 
        466 AAATT
          1 AAATT

        471 GACCTAAATG


Statistics
Matches: 26,  Mismatches: 4, Indels: 1
        0.84            0.13        0.03

Matches are distributed among these distances:
  25    7  0.27
  26   19  0.73

ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32


Consensus pattern (25 bp):   
AAATTACTGAAATACCCCTAGGGAT
Done.