Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01749.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5305
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35


Found at i:4259 original size:54 final size:55

Alignment explanation


    Indices: 4196--4303  Score: 200
    Period size: 54  Copynumber: 2.0  Consensus size: 55

       4186 GAGGACCTAG

                                                                   
       4196 TGTGTCTCTATTTACTATTTTCGGATGATAAC-TATTTTTTCTTTTGGGCAACTA
          1 TGTGTCTCTATTTACTATTTTCGGATGATAACTTATTTTTTCTTTTGGGCAACTA

                                              *                   
       4250 TGTGTCTCTATTTACTATTTTCGGATGATAACTTTTTTTTTCTTTTGGGCAACT
          1 TGTGTCTCTATTTACTATTTTCGGATGATAACTTATTTTTTCTTTTGGGCAACT

       4304 GTCCTTAAGT


Statistics
Matches: 52,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  54   32  0.62
  55   20  0.38

ACGTcount: A:0.19, C:0.15, G:0.15, T:0.52


Consensus pattern (55 bp):   
TGTGTCTCTATTTACTATTTTCGGATGATAACTTATTTTTTCTTTTGGGCAACTA
Done.