Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01760.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:857 original size:19 final size:18

Alignment explanation


    Indices: 813--864  Score: 59
    Period size: 19  Copynumber: 2.8  Consensus size: 18

        803 CTATTATTCG

                             *
        813 TAAATTAAATTATTTTCT
          1 TAAATTAAATTATTTTCA

              **        *      
        831 TATTTTAAATGTTTTTTCA
          1 TAAATTAAAT-TATTTTCA

                           
        850 TAAATTAAATTATTT
          1 TAAATTAAATTATTT

        865 AGATATTAAA


Statistics
Matches: 26,  Mismatches: 7, Indels: 2
        0.74            0.20        0.06

Matches are distributed among these distances:
  18   12  0.46
  19   14  0.54

ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58


Consensus pattern (18 bp):   
TAAATTAAATTATTTTCA
Done.