Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01761.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4291
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30


Found at i:1250 original size:19 final size:19

Alignment explanation


    Indices: 1222--1261  Score: 62
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1212 TAAAATAGGT

                 *        *    
       1222 TTAATTTTTTTACTTAAAC
          1 TTAATATTTTTACTCAAAC

                               
       1241 TTAATATTTTTACTCAAAC
          1 TTAATATTTTTACTCAAAC

              
       1260 TT
          1 TT

       1262 TCATAAATTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.33, C:0.12, G:0.00, T:0.55


Consensus pattern (19 bp):   
TTAATATTTTTACTCAAAC
Done.