Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01763.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 575

Length: 959
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32


Found at i:146 original size:6 final size:6

Alignment explanation


    Indices: 137--199  Score: 99
    Period size: 6  Copynumber: 10.5  Consensus size: 6

        127 GCTTCGTACC

                 *                              *      *           
        137 CACTCC CACTCT CACTCT CACTCT CACTCT CGCTCT CGCTCT CACTCT
          1 CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT CACTCT

                             
        185 CACTCT CACTCT CAC
          1 CACTCT CACTCT CAC

        200 ATGTGAAACT


Statistics
Matches: 54,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   54  1.00

ACGTcount: A:0.14, C:0.52, G:0.03, T:0.30


Consensus pattern (6 bp):   
CACTCT

Done.