Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01764.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3144
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:1986 original size:18 final size:18

Alignment explanation


    Indices: 1959--2004  Score: 83
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       1949 TAATATATAG

                 *            
       1959 ATTGTAATAAAAACAAGA
          1 ATTGTCATAAAAACAAGA

                              
       1977 ATTGTCATAAAAACAAGA
          1 ATTGTCATAAAAACAAGA

                      
       1995 ATTGTCATAA
          1 ATTGTCATAA

       2005 TTTATCTTAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   27  1.00

ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26


Consensus pattern (18 bp):   
ATTGTCATAAAAACAAGA
Done.