Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01776.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4158
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:333 original size:6 final size:6

Alignment explanation


    Indices: 322--348  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

        312 GCCACACTTA

                                           
        322 CAACAG CAACAG CAACAG CAACAG CAA
          1 CAACAG CAACAG CAACAG CAACAG CAA

        349 GGGACTTATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.52, C:0.33, G:0.15, T:0.00


Consensus pattern (6 bp):   
CAACAG

Done.