Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01785.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4456
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:1912 original size:35 final size:34

Alignment explanation


    Indices: 1843--1991  Score: 174
    Period size: 35  Copynumber: 4.3  Consensus size: 34

       1833 AAGTATGCCT

                        *            * *      
       1843 CCTTGAAGGCTATGT-TTAAGAAGATGCAGTATG
          1 CCTTGAAGGCTAAGTGTTAAGAAGACGAAGTATG

                                           *   
       1876 CCTTGAAGGCTAAGTGTTATAGAAGACGAAGCATG
          1 CCTTGAAGGCTAAGTGTTA-AGAAGACGAAGTATG

                            *  *      *     *  
       1911 CCTTGAAGGCTAAGTATTTGAGAAGATGAAGTTTG
          1 CCTTGAAGGCTAAGT-GTTAAGAAGACGAAGTATG

                *                      *       
       1946 CCTTAAAGGCTAAGTGTTGAAGAAGACAAAGTATG
          1 CCTTGAAGGCTAAGTGTT-AAGAAGACGAAGTATG

                       
       1981 CCTTGAAGGCT
          1 CCTTGAAGGCT

       1992 GTGTCTAAGA


Statistics
Matches: 96,  Mismatches: 16, Indels: 6
        0.81            0.14        0.05

Matches are distributed among these distances:
  33   14  0.15
  34    5  0.05
  35   75  0.78
  36    2  0.02

ACGTcount: A:0.33, C:0.13, G:0.28, T:0.27


Consensus pattern (34 bp):   
CCTTGAAGGCTAAGTGTTAAGAAGACGAAGTATG

Found at i:1948 original size:70 final size:68

Alignment explanation


    Indices: 1843--1991  Score: 201
    Period size: 70  Copynumber: 2.2  Consensus size: 68

       1833 AAGTATGCCT

                         *            *          *                       *   
       1843 CCTTGAAGGCTATGTTTAAGAAGATGCAGTATGCCTTGAAGGCTAAGTGTT-ATAGAAGACGAAG
          1 CCTTGAAGGCTATATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTGTTGA-AGAAGACAAAG

                
       1907 CATG
         65 CATG

                               *            *                                
       1911 CCTTGAAGGCTAAGTATTTGAGAAGATGAAGTTTGCCTTAAAGGCTAAGTGTTGAAGAAGACAAA
          1 CCTTGAAGGCT-A-TATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTGTTGAAGAAGACAAA

             *   
       1976 GTATG
         64 GCATG

                       
       1981 CCTTGAAGGCT
          1 CCTTGAAGGCT

       1992 GTGTCTAAGA


Statistics
Matches: 71,  Mismatches: 7, Indels: 4
        0.87            0.09        0.05

Matches are distributed among these distances:
  68   11  0.15
  69    1  0.01
  70   58  0.82
  71    1  0.01

ACGTcount: A:0.33, C:0.13, G:0.28, T:0.27


Consensus pattern (68 bp):   
CCTTGAAGGCTATATTTAAGAAGATGAAGTATGCCTTAAAGGCTAAGTGTTGAAGAAGACAAAGC
ATG
Done.