Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01785.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2973
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34


Found at i:2735 original size:41 final size:41

Alignment explanation


    Indices: 2690--2818  Score: 213
    Period size: 41  Copynumber: 3.1  Consensus size: 41

       2680 GTGGGGCACC

                                                 *   
       2690 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAGGAG
          1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG

                  *                  *               
       2731 GCATACTTGTTTGGTACATTGTTGGTAAAGACTGTGAAGAG
          1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG

                                               *     
       2772 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTAAAGAG
          1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG

             *    
       2813 GAATAC
          1 GCATAC

       2819 ATAGTTGCTA


Statistics
Matches: 81,  Mismatches: 7, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  41   81  1.00

ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30


Consensus pattern (41 bp):   
GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
Done.