Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01786.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3576
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34


Found at i:106 original size:29 final size:28

Alignment explanation


    Indices: 53--120  Score: 68
    Period size: 27  Copynumber: 2.4  Consensus size: 28

         43 TATTCTTTTG

                    *           *      *
         53 ATATAC-TCTTTCTATCTATTTGTGTAT
          1 ATATACTTTTTTCTATCTATGTGTGTAC

                                        * 
         80 ATATA-TTTTTTCTATCTGTATGTGTGTGC
          1 ATATACTTTTTTCTATC--TATGTGTGTAC

                        
        109 ATATACTTTTTT
          1 ATATACTTTTTT

        121 TATATAATTC


Statistics
Matches: 33,  Mismatches: 4, Indels: 5
        0.79            0.10        0.12

Matches are distributed among these distances:
  27   14  0.42
  29   13  0.39
  30    6  0.18

ACGTcount: A:0.21, C:0.12, G:0.10, T:0.57


Consensus pattern (28 bp):   
ATATACTTTTTTCTATCTATGTGTGTAC
Done.