Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga03g01786.P5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10090
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Found at i:6470 original size:22 final size:22
Alignment explanation
Indices: 6442--6483 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
6432 GGGAGTGTAA
6442 GAATATTCTGTAAATATTTTAG
1 GAATATTCTGTAAATATTTTAG
* *
6464 GAATATTTTGTAGATATTTT
1 GAATATTCTGTAAATATTTT
6484 TTTTTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.50
Consensus pattern (22 bp):
GAATATTCTGTAAATATTTTAG
Found at i:9852 original size:41 final size:41
Alignment explanation
Indices: 9807--9935 Score: 213
Period size: 41 Copynumber: 3.1 Consensus size: 41
9797 GTGGGGCACC
*
9807 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAGGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
* *
9848 GCATACTTGTTTGGTACATTGTTGGTAAAGACTGTGAAGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
*
9889 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTAAAGAG
1 GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
*
9930 GAATAC
1 GCATAC
9936 ATAGTTGCTA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 81 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (41 bp):
GCATACCTGTTTGGTACATTGTTGGAAAAGACTGTGAAGAG
Done.