Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01789.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 385

Length: 643
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23


Found at i:610 original size:32 final size:32

Alignment explanation


    Indices: 569--630  Score: 115
    Period size: 32  Copynumber: 1.9  Consensus size: 32

        559 ATCTATTTTT

                                            
        569 CATTGTTCAACTCTTTGACAACACGAAAAATC
          1 CATTGTTCAACTCTTTGACAACACGAAAAATC

                                   *      
        601 CATTGTTCAACTCTTTGACAACATGAAAAA
          1 CATTGTTCAACTCTTTGACAACACGAAAAA

        631 ACCAAAAGCT


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   29  1.00

ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29


Consensus pattern (32 bp):   
CATTGTTCAACTCTTTGACAACACGAAAAATC
Done.