Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01792.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3098
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:708 original size:61 final size:61

Alignment explanation


    Indices: 613--734  Score: 244
    Period size: 61  Copynumber: 2.0  Consensus size: 61

        603 AATAATCGAG

                                                                         
        613 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
          1 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC

                                                                         
        674 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
          1 TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC

        735 GGGAGCTGCT


Statistics
Matches: 61,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   61  1.00

ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23


Consensus pattern (61 bp):   
TTAGAGCTGTAGCTATGAGCGCTACAGATGGTCTAACGAGAGGAATGGAAGTGATTGACAC
Done.