Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01796.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1562
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32


Found at i:28 original size:16 final size:16

Alignment explanation


    Indices: 7--57  Score: 93
    Period size: 16  Copynumber: 3.2  Consensus size: 16

          1 AAGAGC

                            
          7 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

                            
         23 AAATACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               *            
         39 AAACACGCTAGTAAAT
          1 AAATACGCTAGTAAAT

               
         55 AAA
          1 AAA

         58 ATACTAGAAA


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  16   34  1.00

ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22


Consensus pattern (16 bp):   
AAATACGCTAGTAAAT

Found at i:997 original size:16 final size:17

Alignment explanation


    Indices: 976--1009  Score: 61
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        966 AATTAGAGAA

                             
        976 TTCTATTTAA-TTCTAT
          1 TTCTATTTAATTTCTAT

                             
        992 TTCTATTTAATTTCTAT
          1 TTCTATTTAATTTCTAT

             
       1009 T
          1 T

       1010 AAATCCATTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   10  0.59
  17    7  0.41

ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65


Consensus pattern (17 bp):   
TTCTATTTAATTTCTAT
Done.