Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01802.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29


Found at i:13 original size:2 final size:2

Alignment explanation


    Indices: 7--37  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

          1 GCCCAC

                                                          
          7 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

         38 ACACACACAC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Found at i:119 original size:6 final size:6

Alignment explanation


    Indices: 106--136  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

         96 TTTCTTTTTC

                                                 
        106 TCTT-T TCTTGT TCTTGT TCTTGT TCTTGT TC
          1 TCTTGT TCTTGT TCTTGT TCTTGT TCTTGT TC

        137 CCCCCTTGTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    4  0.16
   6   21  0.84

ACGTcount: A:0.00, C:0.19, G:0.13, T:0.68


Consensus pattern (6 bp):   
TCTTGT

Done.