Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01805.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2381
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.27


Found at i:1794 original size:37 final size:37

Alignment explanation


    Indices: 1744--1819  Score: 152
    Period size: 37  Copynumber: 2.1  Consensus size: 37

       1734 CTGACTTCAC

                                                 
       1744 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
          1 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT

                                                 
       1781 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
          1 CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT

              
       1818 CA
          1 CA

       1820 ACCGTGTGGG


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   39  1.00

ACGTcount: A:0.25, C:0.36, G:0.24, T:0.16


Consensus pattern (37 bp):   
CACACGGCCACAAGGTCGAGACACACGCCTTTGTGCT
Done.