Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01806.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3751
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34


Found at i:1433 original size:30 final size:31

Alignment explanation


    Indices: 1376--1449  Score: 89
    Period size: 31  Copynumber: 2.5  Consensus size: 31

       1366 GGCCTAATTT

                          **               
       1376 AAATTTTCAAAAAATCTAGAGGATTTAATGA
          1 AAATTTTCAAAAAAAATAGAGGATTTAATGA

            *                *           * 
       1407 GAATTTTCAAAAAAAATTGAGG-TTTAATTA
          1 AAATTTTCAAAAAAAATAGAGGATTTAATGA

                          
       1437 AAATTTT-AAAAAA
          1 AAATTTTCAAAAAA

       1450 TTTAAGGGCT


Statistics
Matches: 37,  Mismatches: 6, Indels: 2
        0.82            0.13        0.04

Matches are distributed among these distances:
  29    6  0.16
  30   13  0.35
  31   18  0.49

ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34


Consensus pattern (31 bp):   
AAATTTTCAAAAAAAATAGAGGATTTAATGA
Done.