Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01813.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 652

Length: 1088
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32


Found at i:946 original size:6 final size:7

Alignment explanation


    Indices: 920--945  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

        910 GATGCCATTC

                   
        920 TTTTTTA
          1 TTTTTTA

                   
        927 TTTTTTA
          1 TTTTTTA

                   
        934 TTTTTTA
          1 TTTTTTA

                 
        941 TTTTT
          1 TTTTT

        946 AAGTCACATG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (7 bp):   
TTTTTTA
Done.