Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00666.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4303
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35


Found at i:3988 original size:29 final size:27

Alignment explanation


    Indices: 3918--3992  Score: 80
    Period size: 29  Copynumber: 2.6  Consensus size: 27

       3908 ATTGTATTTT

                  *                     
       3918 ATTTTTTTATTTAAAAAAAAGTAAATTA
          1 ATTTTTCTA-TTAAAAAAAAGTAAATTA

                                            
       3946 ATCTTTGTAC-ATTAAAAAAAAGTACAAATTA
          1 AT-TTT-T-CTATTAAAAAAAAGT--AAATTA

                            
       3977 ATTTTTCTATTAAAAA
          1 ATTTTTCTATTAAAAA

       3993 TTTCATCTAC


Statistics
Matches: 40,  Mismatches: 1, Indels: 11
        0.77            0.02        0.21

Matches are distributed among these distances:
  28    3  0.08
  29   24  0.60
  30    5  0.12
  31    8  0.20

ACGTcount: A:0.49, C:0.05, G:0.04, T:0.41


Consensus pattern (27 bp):   
ATTTTTCTATTAAAAAAAAGTAAATTA
Done.