Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01819.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3699
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30


Found at i:2312 original size:20 final size:19

Alignment explanation


    Indices: 2289--2327  Score: 51
    Period size: 20  Copynumber: 2.0  Consensus size: 19

       2279 TGATTGGGCA

                        *       
       2289 TCTTTGAATCTGGGTGTTCT
          1 TCTTTGAATC-GAGTGTTCT

                  *            
       2309 TCTTTGTATCGAGTGTTCT
          1 TCTTTGAATCGAGTGTTCT

       2328 GGTGTTCACC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  19    8  0.47
  20    9  0.53

ACGTcount: A:0.10, C:0.15, G:0.23, T:0.51


Consensus pattern (19 bp):   
TCTTTGAATCGAGTGTTCT
Done.