Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00669.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2445
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33


Found at i:2434 original size:15 final size:15

Alignment explanation


    Indices: 2414--2442  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       2404 AATTGGACAG

                           
       2414 TGGATACATCACTAA
          1 TGGATACATCACTAA

                          
       2429 TGGATACATCACTA
          1 TGGATACATCACTA

       2443 GTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28


Consensus pattern (15 bp):   
TGGATACATCACTAA
Done.