Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00670.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2228
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.27


Found at i:438 original size:107 final size:100

Alignment explanation


    Indices: 46--452  Score: 627
    Period size: 100  Copynumber: 4.0  Consensus size: 100

         36 TTACTTTCAA

                               *  *                           *              
         46 ACTGTCTTTCAAACTGCACCCACGGTCATGGGTCCCCGATTGTTGTTCTTCTGTGATGCGGAATG
          1 ACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGAATG

                  *                *   *       
        111 TGAACTTAGATGAACTGCCGTTTTGACTTCATAAG
         66 TGAACTGAGATGAACTGCCGTTTCGACCTCATAAG

               *                                          *      *           
        146 ACTATCTTTCAAACTGCACTC-TGGTCATGGGTCCCCGATTGTTGTCCTTATGAGATGCGGAATG
          1 ACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGAATG

                                            *  
        210 TGAACTGAGATGAACTGCCGTTTCGACCTCATGAG
         66 TGAACTGAGATGAACTGCCGTTTCGACCTCATAAG

            *                                            *                   
        245 CCTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGCTCTTATGTGATGCGGAATG
          1 ACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGAATG

             *                                 
        310 TAAACTGAGATGAACTGCCGTTTCGACCTCATAAG
         66 TGAACTGAGATGAACTGCCGTTTCGACCTCATAAG

                                                                             
        345 ACTGTCTTTCAAACTGCACTCGTGGTCATGGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATG
          1 ACTGTCTTTCAAACTGCA--C----TCAT-GGTCATGGGTCCCCGATTGTTGTTCTTATGTGATG

                                                      
        410 CGGAATGTGAACTGAGATGAACTGCCGTTTCGACCTCATAAG
         59 CGGAATGTGAACTGAGATGAACTGCCGTTTCGACCTCATAAG

             
        452 A
          1 A

        453 ATGAAAGGAG


Statistics
Matches: 279,  Mismatches: 20, Indels: 9
        0.91            0.06        0.03

Matches are distributed among these distances:
  99   89  0.32
 100  109  0.39
 102    1  0.00
 106    4  0.01
 107   76  0.27

ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31


Consensus pattern (100 bp):   
ACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGAATG
TGAACTGAGATGAACTGCCGTTTCGACCTCATAAG
Done.