Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00670.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2453
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:663 original size:107 final size:100

Alignment explanation


    Indices: 268--677  Score: 633
    Period size: 100  Copynumber: 4.0  Consensus size: 100

        258 AGCCAATAAA

                                  *  *                           *           
        268 AAGACTGTCTTTCAAACTGCACCCACGGTCATGGGTCCCCGATTGTTGTTCTTCTGTGATGCGGA
          1 AAGACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGA

                     *                *   *    
        333 ATGTGAACTTAGATGAACTGCCGTTTTGACTTCAT
         66 ATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT

                  *                                          *      *        
        368 AAGACTATCTTTCAAACTGCACTC-TGGTCATGGGTCCCCGATTGTTGTCCTTATGAGATGCGGA
          1 AAGACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGA

                                               
        432 ATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT
         66 ATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT

            *  *                                            *                
        467 GAGCCTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGCTCTTATGTGATGCGGA
          1 AAGACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGA

                *                              
        532 ATGTAAACTGAGATGAACTGCCGTTTCGACCTCAT
         66 ATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT

                                                                             
        567 AAGACTGTCTTTCAAACTGCACTCGTGGTCATGGGTCATGGGTCCCCGATTGTTGTTCTTATGTG
          1 AAGACTGTCTTTCAAACTGCA--C----TCAT-GGTCATGGGTCCCCGATTGTTGTTCTTATGTG

                                                      
        632 ATGCGGAATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT
         59 ATGCGGAATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT

                
        674 AAGA
          1 AAGA

        678 ATGAAAGGAG


Statistics
Matches: 282,  Mismatches: 20, Indels: 9
        0.91            0.06        0.03

Matches are distributed among these distances:
  99   89  0.32
 100  112  0.40
 102    1  0.00
 106    4  0.01
 107   76  0.27

ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31


Consensus pattern (100 bp):   
AAGACTGTCTTTCAAACTGCACTCATGGTCATGGGTCCCCGATTGTTGTTCTTATGTGATGCGGA
ATGTGAACTGAGATGAACTGCCGTTTCGACCTCAT
Done.