Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01879.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3020
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28


Found at i:1144 original size:24 final size:24

Alignment explanation


    Indices: 1098--1144  Score: 60
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1088 AGGACCGTAA

                             **     
       1098 AGGAGTTCCAAGATATTTTTCCGG
          1 AGGAGTTCCAAGATATTCCTCCGG

                                    
       1122 AGGAGCTTCCAAGAT-TTCCTCCG
          1 AGGAG-TTCCAAGATATTCCTCCG

       1145 AACCGAGAAG


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  24   11  0.55
  25    9  0.45

ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30


Consensus pattern (24 bp):   
AGGAGTTCCAAGATATTCCTCCGG
Done.