Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01914.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2423
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


Found at i:817 original size:61 final size:61

Alignment explanation


    Indices: 722--853  Score: 246
    Period size: 61  Copynumber: 2.2  Consensus size: 61

        712 ATCTCTGGCT

                                                                         
        722 TTTCATGCTTCACATAACACTCAGCCTTATAAACAATTTTACTGTGCATGAAAGAAAAACA
          1 TTTCATGCTTCACATAACACTCAGCCTTATAAACAATTTTACTGTGCATGAAAGAAAAACA

                                                     *              *    
        783 TTTCATGCTTCACATAACACTCAGCCTTATAAACAATTTTATTGTGCATGAAAGAATAACA
          1 TTTCATGCTTCACATAACACTCAGCCTTATAAACAATTTTACTGTGCATGAAAGAAAAACA

                      
        844 TTTCATGCTT
          1 TTTCATGCTT

        854 GAGCTCTAGG


Statistics
Matches: 69,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  61   69  1.00

ACGTcount: A:0.36, C:0.20, G:0.10, T:0.33


Consensus pattern (61 bp):   
TTTCATGCTTCACATAACACTCAGCCTTATAAACAATTTTACTGTGCATGAAAGAAAAACA
Done.