Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01921.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3423
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:716 original size:49 final size:49

Alignment explanation


    Indices: 663--761  Score: 189
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        653 AGACAGAAAA

                                      *                      
        663 GACCAGTACATCATCACTAACAACAAGTTGTTACCATATTGGAAAAGCG
          1 GACCAGTACATCATCACTAACAACAAATTGTTACCATATTGGAAAAGCG

                                                             
        712 GACCAGTACATCATCACTAACAACAAATTGTTACCATATTGGAAAAGCG
          1 GACCAGTACATCATCACTAACAACAAATTGTTACCATATTGGAAAAGCG

             
        761 G
          1 G

        762 GTTATCTGGA


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  49   49  1.00

ACGTcount: A:0.39, C:0.22, G:0.16, T:0.22


Consensus pattern (49 bp):   
GACCAGTACATCATCACTAACAACAAATTGTTACCATATTGGAAAAGCG
Done.