Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01947.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1378
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21


Found at i:546 original size:120 final size:120

Alignment explanation


    Indices: 410--784  Score: 533
    Period size: 120  Copynumber: 3.1  Consensus size: 120

        400 ATGCCAACGG

                                               *                *   *    *   
        410 CTCAGGCTCAAACTGCTGCT-GCTTCAGCCTCCGGCATTGAAAAACAAAGAGGCCAAAAAGAACC
          1 CTCAGGCTCAAACTGCTG-TAGCTTCAGCCTCCGGTATTGAAAAACAAAGAGACCAGAAAGTACC

                            *     *                          *      
        474 GTCACCTCCACCAAAGACTGTATCTGAGCCTAAACCACCAATGGCGACGACGGCTC
         65 GTCACCTCCACCAAAGGCTGTAACTGAGCCTAAACCACCAATGGCGACGGCGGCTC

                                *     *        *         *                   
        530 CTCAGGCTCAAACTGCTGTAACTTCAACCTCCGGTGTTGAAAAACTAAGAGACCAGAAAGTACCG
          1 CTCAGGCTCAAACTGCTGTAGCTTCAGCCTCCGGTATTGAAAAACAAAGAGACCAGAAAGTACCG

              *                  *               *              *  
        595 TCTCCTCCACCAAAGGCTGTAGCTGAGCCTAAACCACAAATGGCGACGGCGGTTC
         66 TCACCTCCACCAAAGGCTGTAACTGAGCCTAAACCACCAATGGCGACGGCGGCTC

                         *             *    *                                
        650 CTCAGGCTCAAACAGCTGTAGCTTCAGACTCCAGTATTGAAAAACAAAGAGACCAGAAAGTACCG
          1 CTCAGGCTCAAACTGCTGTAGCTTCAGCCTCCGGTATTGAAAAACAAAGAGACCAGAAAGTACCG

                                                                   
        715 TCACCT---CCAAAGGCTGTAACTGAGCCTAAACCACCAATGGCGACGGCGGCTC
         66 TCACCTCCACCAAAGGCTGTAACTGAGCCTAAACCACCAATGGCGACGGCGGCTC

                **            
        767 CTCAATCTCAAACTGCTG
          1 CTCAGGCTCAAACTGCTG

        785 CAACTTCTCC


Statistics
Matches: 226,  Mismatches: 28, Indels: 5
        0.87            0.11        0.02

Matches are distributed among these distances:
 117   58  0.26
 119    1  0.00
 120  167  0.74

ACGTcount: A:0.31, C:0.30, G:0.21, T:0.18


Consensus pattern (120 bp):   
CTCAGGCTCAAACTGCTGTAGCTTCAGCCTCCGGTATTGAAAAACAAAGAGACCAGAAAGTACCG
TCACCTCCACCAAAGGCTGTAACTGAGCCTAAACCACCAATGGCGACGGCGGCTC
Done.