Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01950.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1759
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:840 original size:12 final size:12

Alignment explanation


    Indices: 823--848  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        813 AAGTTACCCA

                        
        823 TTGGCTAAAGTT
          1 TTGGCTAAAGTT

                        
        835 TTGGCTAAAGTT
          1 TTGGCTAAAGTT

              
        847 TT
          1 TT

        849 CGATTCATGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46


Consensus pattern (12 bp):   
TTGGCTAAAGTT
Done.