Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01955.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3513
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34


Found at i:1071 original size:33 final size:33

Alignment explanation


    Indices: 1033--1131  Score: 171
    Period size: 33  Copynumber: 3.0  Consensus size: 33

       1023 AACTGAGTGG

                    *                        
       1033 GAGTGTTTGGTTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

                      *                      
       1066 GAGTGTTTTGCTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

             *                               
       1099 GGGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
          1 GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT

       1132 CAAGAAGAAA


Statistics
Matches: 62,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   62  1.00

ACGTcount: A:0.17, C:0.10, G:0.41, T:0.31


Consensus pattern (33 bp):   
GAGTGTTTTGTTGCTGGACAGGAGCTGGAATGT
Done.