Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01967.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3510
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26


Found at i:158 original size:21 final size:22

Alignment explanation


    Indices: 125--166  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        115 AGATAAAGCA

                                  
        125 AGGGAAATAGAAGGAAAAGAGG
          1 AGGGAAATAGAAGGAAAAGAGG

                    *     *      
        147 AGGG-AATCGAAGGGAAAGAG
          1 AGGGAAATAGAAGGAAAAGAG

        167 ATCAAAAGTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21   14  0.78
  22    4  0.22

ACGTcount: A:0.50, C:0.02, G:0.43, T:0.05


Consensus pattern (22 bp):   
AGGGAAATAGAAGGAAAAGAGG

Found at i:3360 original size:4 final size:4

Alignment explanation


    Indices: 3353--3387  Score: 70
    Period size: 4  Copynumber: 8.8  Consensus size: 4

       3343 TATACATACA

                                                       
       3353 TATG TATG TATG TATG TATG TATG TATG TATG TAT
          1 TATG TATG TATG TATG TATG TATG TATG TATG TAT

       3388 AAACTCCTAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   31  1.00

ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51


Consensus pattern (4 bp):   
TATG

Done.