Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00061.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3205
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.29


Found at i:2535 original size:72 final size:72

Alignment explanation


    Indices: 2452--2590  Score: 224
    Period size: 72  Copynumber: 1.9  Consensus size: 72

       2442 CGATTCCGAT

                               *           *                                 
       2452 GAAAAGGGTTCTTCCGATTGTAGCGAAGACCTTAATCCATAAGGCTTACACAAGTAAAAGTGCCA
          1 GAAAAGGGTTCTTCCGATTATAGCGAAGACCATAATCCATAAGGCTTACACAAGTAAAAGTGCCA

                   
       2517 TTGAAAA
         66 TTGAAAA

                  *                      **          *                       
       2524 GAAAAGTGTTCTTCCGATTATAGCGAAGATGATAATCCATATGGCTTACACAAGTAAAAGTGCCA
          1 GAAAAGGGTTCTTCCGATTATAGCGAAGACCATAATCCATAAGGCTTACACAAGTAAAAGTGCCA

              
       2589 TT
         66 TT

       2591 CTTTGGTATA


Statistics
Matches: 61,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  72   61  1.00

ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26


Consensus pattern (72 bp):   
GAAAAGGGTTCTTCCGATTATAGCGAAGACCATAATCCATAAGGCTTACACAAGTAAAAGTGCCA
TTGAAAA
Done.