Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01975.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3377
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:2349 original size:15 final size:15

Alignment explanation


    Indices: 2329--2358  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2319 AAAGTTTCCT

                           
       2329 TTGCCTGCAATTACA
          1 TTGCCTGCAATTACA

                           
       2344 TTGCCTGCAATTACA
          1 TTGCCTGCAATTACA

       2359 AACAGTTTCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33


Consensus pattern (15 bp):   
TTGCCTGCAATTACA

Found at i:3132 original size:21 final size:21

Alignment explanation


    Indices: 3108--3148  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       3098 TCTTTTAAAA

                 *               
       3108 AGATATAACTATTAAAGTAAG
          1 AGATACAACTATTAAAGTAAG

                         *      
       3129 AGATACAACTATTCAAGTAA
          1 AGATACAACTATTAAAGTAA

       3149 AGTATCTTAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.51, C:0.10, G:0.12, T:0.27


Consensus pattern (21 bp):   
AGATACAACTATTAAAGTAAG
Done.