Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00679.P4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5955
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:341 original size:3 final size:3

Alignment explanation


    Indices: 333--370  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        323 TCAAGTAGTC

                              *         *                     
        333 GAA GAA GAA GAA GAG GAA GAA AAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        371 GTACTTTTAC


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (3 bp):   
GAA

Found at i:5090 original size:51 final size:51

Alignment explanation


    Indices: 5014--5116  Score: 206
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       5004 ACCACCAATC

                                                               
       5014 ATGCTGAATGGATTTCATAAGGTCCACTTGCTAATGTCATATAACATTCTA
          1 ATGCTGAATGGATTTCATAAGGTCCACTTGCTAATGTCATATAACATTCTA

                                                               
       5065 ATGCTGAATGGATTTCATAAGGTCCACTTGCTAATGTCATATAACATTCTA
          1 ATGCTGAATGGATTTCATAAGGTCCACTTGCTAATGTCATATAACATTCTA

             
       5116 A
          1 A

       5117 GTTTATCACA


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  51   52  1.00

ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35


Consensus pattern (51 bp):   
ATGCTGAATGGATTTCATAAGGTCCACTTGCTAATGTCATATAACATTCTA
Done.