Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00680.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 523

Length: 873
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33


Found at i:28 original size:18 final size:18

Alignment explanation


    Indices: 2--37  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

          1 C

                *             
          2 AAAACAAAAAGAAGAAGA
          1 AAAAAAAAAAGAAGAAGA

                       *      
         20 AAAAAAAAAAGCAGAAGA
          1 AAAAAAAAAAGAAGAAGA

         38 TAATATTGGG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.78, C:0.06, G:0.17, T:0.00


Consensus pattern (18 bp):   
AAAAAAAAAAGAAGAAGA
Done.