Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02031.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5365
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32


Found at i:4405 original size:17 final size:17

Alignment explanation


    Indices: 4379--4411  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       4369 TTTCAAACTT

                             
       4379 TTATAAAAAAATAAAAA
          1 TTATAAAAAAATAAAAA

                 *          
       4396 TTATATAAAAATAAAA
          1 TTATAAAAAAATAAAA

       4412 TATATGTGTG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27


Consensus pattern (17 bp):   
TTATAAAAAAATAAAAA
Done.