Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02035.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5432
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32


Found at i:3916 original size:34 final size:34

Alignment explanation


    Indices: 3873--3941  Score: 138
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3863 AATGTGAATG

                                              
       3873 TTAGCTTGTAGGCATGAACTAGGAACTTTTAATT
          1 TTAGCTTGTAGGCATGAACTAGGAACTTTTAATT

                                              
       3907 TTAGCTTGTAGGCATGAACTAGGAACTTTTAATT
          1 TTAGCTTGTAGGCATGAACTAGGAACTTTTAATT

             
       3941 T
          1 T

       3942 CATTAGATGC


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   35  1.00

ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39


Consensus pattern (34 bp):   
TTAGCTTGTAGGCATGAACTAGGAACTTTTAATT
Done.