Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00686.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 997

Length: 1662
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27


Found at i:1424 original size:4 final size:4

Alignment explanation


    Indices: 1407--1441  Score: 52
    Period size: 4  Copynumber: 8.8  Consensus size: 4

       1397 TATAGATTGT

                       *               *               
       1407 ATAC ATAC AAAC ATAC ATAC ATTC ATAC ATAC ATA
          1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA

       1442 TATATGTAGT


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26


Consensus pattern (4 bp):   
ATAC

Done.