Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02057.F16

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6055
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.34


Found at i:3641 original size:15 final size:15

Alignment explanation


    Indices: 3621--3650  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3611 AAACATGGTA

                           
       3621 AATTTGACTATTTAG
          1 AATTTGACTATTTAG

                           
       3636 AATTTGACTATTTAG
          1 AATTTGACTATTTAG

       3651 GATTGAATAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47


Consensus pattern (15 bp):   
AATTTGACTATTTAG

Found at i:5770 original size:6 final size:6

Alignment explanation


    Indices: 5759--5785  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       5749 CATCACTGCA

                                           
       5759 ACCGCC ACCGCC ACCGCC ACCGCC ACC
          1 ACCGCC ACCGCC ACCGCC ACCGCC ACC

       5786 CTATGCTGCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.67, G:0.15, T:0.00


Consensus pattern (6 bp):   
ACCGCC

Done.