Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02057.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4528
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.32


Found at i:2101 original size:15 final size:15

Alignment explanation


    Indices: 2081--2110  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       2071 AAACATGGTA

                           
       2081 AATTTGACTATTTAG
          1 AATTTGACTATTTAG

                           
       2096 AATTTGACTATTTAG
          1 AATTTGACTATTTAG

       2111 GATTGAATAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47


Consensus pattern (15 bp):   
AATTTGACTATTTAG

Found at i:4243 original size:6 final size:6

Alignment explanation


    Indices: 4232--4258  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       4222 CATCACTGCA

                                           
       4232 ACCGCC ACCGCC ACCGCC ACCGCC ACC
          1 ACCGCC ACCGCC ACCGCC ACCGCC ACC

       4259 CTATGCTGCC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.67, G:0.15, T:0.00


Consensus pattern (6 bp):   
ACCGCC

Done.