Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00687.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4251
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31


Found at i:3109 original size:2 final size:2

Alignment explanation


    Indices: 3102--3133  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       3092 GAATTTGAAT

                                                *          
       3102 TC TC TC TC TC TC TC TC TC TC TC TC CC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

       3134 CCTGTACTTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47


Consensus pattern (2 bp):   
TC

Done.