Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02060.M3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6857
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30


Found at i:3531 original size:22 final size:23

Alignment explanation


    Indices: 3506--3558  Score: 56
    Period size: 22  Copynumber: 2.3  Consensus size: 23

       3496 GTTCATCGGT

                    *              
       3506 TTTTAAATTTTACCAT-TCTGAA
          1 TTTTAAATGTTACCATATCTGAA

                  *              * 
       3528 TTTT-ACTGTTACCATATCTGCA
          1 TTTTAAATGTTACCATATCTGAA

                     
       3550 TTGTTAAAT
          1 TT-TTAAAT

       3559 CTACCGAATT


Statistics
Matches: 24,  Mismatches: 4, Indels: 4
        0.75            0.12        0.12

Matches are distributed among these distances:
  21    9  0.38
  22   11  0.46
  23    2  0.08
  24    2  0.08

ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49


Consensus pattern (23 bp):   
TTTTAAATGTTACCATATCTGAA
Done.