Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02071.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3133
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:937 original size:48 final size:48

Alignment explanation


    Indices: 866--961  Score: 192
    Period size: 48  Copynumber: 2.0  Consensus size: 48

        856 TATACAAGGC

                                                            
        866 TTATTTGTTTTTGCTGCTATTTCACATTTGATCAATTTGATAAGCAAT
          1 TTATTTGTTTTTGCTGCTATTTCACATTTGATCAATTTGATAAGCAAT

                                                            
        914 TTATTTGTTTTTGCTGCTATTTCACATTTGATCAATTTGATAAGCAAT
          1 TTATTTGTTTTTGCTGCTATTTCACATTTGATCAATTTGATAAGCAAT

        962 CATCAGATCA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   48  1.00

ACGTcount: A:0.25, C:0.12, G:0.12, T:0.50


Consensus pattern (48 bp):   
TTATTTGTTTTTGCTGCTATTTCACATTTGATCAATTTGATAAGCAAT
Done.