Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g02078.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2883
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:2100 original size:7 final size:7

Alignment explanation


    Indices: 2085--2120  Score: 56
    Period size: 7  Copynumber: 5.1  Consensus size: 7

       2075 GGATGAAATT

                   
       2085 AAAAA-A
          1 AAAAAGA

                   
       2091 AAAAAGA
          1 AAAAAGA

                   
       2098 AAAAAGA
          1 AAAAAGA

                   
       2105 AAAAAGA
          1 AAAAAGA

                    
       2112 ATAAAAGA
          1 A-AAAAGA

             
       2120 A
          1 A

       2121 CCATAGTCTT


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   6    5  0.18
   7   16  0.57
   8    7  0.25

ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03


Consensus pattern (7 bp):   
AAAAAGA

Done.